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Title: Carbohydrate Metabolism Study Guide
Description: Covers the pathways of glycolysis, gluconeogenesis, the Krebs/Citric Acid cycle and the structures of key intermediates in central metabolic pathways. Aimed at 1st/2nd year University Students. Taken from Glasgow University Lectures, Molecules of Life course.
Description: Covers the pathways of glycolysis, gluconeogenesis, the Krebs/Citric Acid cycle and the structures of key intermediates in central metabolic pathways. Aimed at 1st/2nd year University Students. Taken from Glasgow University Lectures, Molecules of Life course.
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Carbohydrate Metabolism Study Guide
i
...
how and where breakdown of simple sugars and fats generates
the NADH and FADH2 electron carriers
...
e
...
The major pathway for metabolism of glucose
• Ancient and found in many organisms
...
• Occurs in the cytoplasm of cells
...
• Much more efficient under aerobic conditions: complete
oxidation of glucose under aerobic conditions yields 36-38
molecules of ATP
...
− Rarely found in the ‘open’ form (so doesn’t react with blood
proteins to ‘glycate them’)
...
− Could have been a fuel source for primitive biochemical
systems (which would have evolved pathways to utilise
glucose for energy production)
...
• Acquisition: new synthesis (gluconeogenesis); diet (“carbs”)
...
Glucose from dietary carbohydrates
• Dietary carbohydrate is complex; starch glycogen, di and
trisaccharides, not usually glucose
...
• Monosaccharides are transported across the intestinal wall to
the bloodstream
...
The energy yield under anaerobic conditions is -96kJmol^-1
(23kcalmol^-1)
...
− 1a – cleavage of glucose into 3 carbon units
...
• Glucose is taken into cells by specific transporter proteins
then enters glycolysis (or the “glycolytic pathway”)
...
• Costs energy (1 x ATP)
...
• Glc-6P cannot diffuse through the cell
membrane
...
• Glc-6P is relatively unstable and easier
to break open
...
Phosphoglucoisomerase
• Converts an aldose to a ketose
...
• Drives isomerisation to form / stabilise
the open form of Fructose-6P (which
has a ketone group at C2)
...
• This reaction is reversible (so, unlike
hexokinase, this isomerase can be used in gluconeogenesis)
...
e
...
• Costs energy (1 x ATP)
...
• This reaction is irreversible and
is the rate-limiting step in glycolysis
...
• The aldolase reaction is reversible and indeed the enzyme is
named for the opposite reaction (i
...
, production of F1, 6BP)
...
But, at
equilibrium, 96% of
these two isomers are
in the form of DHAP
...
• Triose phosphate isomerase (TPI) is incredibly catalytically
efficient; it converts every DHAP it meets to G3P
...
• TPI keeps stage 2 supplied with G3P
...
•
•
•
•
•
•
The 1st reaction, catalysed by
glyceraldehdye 3-phosphate
dehydrogenase (GAPDH)
makes 1, 3 bis
phosphoglycerate (1, 3BPG)
which has lot of trapped
energy; phosphoglycerate
kinase harvests this energy
to generate ATP
...
Since 2 G3P molecules enter stage 2 for every glucose
starting stage 1, the 2 ATPs per glucose generated have paid
the cost of stage 1
...
The first two reactions in stage 2 used a theme of making a
compound that is slightly unstable, but has high potential energy, in
the first step and letting the second step collect that energy
...
•
•
•
The last step created 3phosphoglycerate; 2-phosphoglycerate
would’ve been better
...
Dehydration - removal of water - from
2-phosphoglycerate makes it possible to squeeze a little more
energy out of the pathway
...
• Enolase dehydrates 2-phosphoglycerate
to yield phosphoenol pyruvate (PEP)
...
• PEP is unstable
...
• The final reaction is essentially irreversible
...
Metabolic Fates of Pyruvate
Glycolysis yields two molecules of pyruvate and 2 of ATP per
glucose entering the system; but there is a deficiency of 2 x NAD+
per glucose
...
• In micro-organisms, under anaerobic conditions, ethanol is
formed
...
The fate of pyruvate during
anaerobic metabolism;
lactic acid – hurts but
generates the NAD+
necessary for glycolysis to
continue
...
The Citric Acid Cycle
Also known as the “TriCarboxylic Acid (TCA)” cycle or “Krebs Cycle”
...
• Generates >90% of energy used by human cells under
aerobic conditions
...
• Provides precursors for synthesis of other macromolecules
(amino acids, nucleotides etc)
...
e
...
• Is widespread, being found in many organisms and tissues
...
• Uses oxidative decarboxylation to release CO2 and harvest
electrons
...
• RE-oxidation (loss of electrons) of co-factors powers ATP
synthesis in oxidative phosphorylation (3 x ATP / NADH, 2 x
ATP / FADH2)
...
− Harvesting energy
...
• Currency conversion:
In the mitochondrial
electron transport
(respiratory) chain
each NADH leads to
production of 3 ATP; each FADH2 yields 2 ATP
...
• The pyruvate
dehydrogenase
complex irreversibly
converts the endproduct of glycolysis pyruvate - to a twocarbon unit that can
enter the citric acid cycle associated with the co-factor
Coenzyme A (CoA)
...
e
...
AcetylCoA can now enter the citric acid cycle and act as its
fuel
...
Citrate synthase
• Performs an aldol condensation joining oxaloacetate (C4) and
acetyl-CoA (C2)
...
• Citryl-CoA has a high energy, unstable thioester bond
...
• Releases reduced CoA (HSCoA) to keep PDH supplied
...
OAA must
be replenished
...
But, just like 3-posphoglycerate in glycolysis, some
groups aren’t in the best place
...
• Catalyses a two-step isomerisation
reaction
...
• Cis aconitate is then re-hydrated to yield
isocitrate
...
• All the functional groups are now in the
correct place for the subsequent enzymes to work optimally
...
Phase 2: Collecting Energy
The citric acid cycle collects energy form electrons with high
transfer potential using oxidation-reduction reactions
...
Isocitrate dehydrogenase
• Catalyses a two-step process
...
• The unstable “oxalosuccinate”
degrades
...
• This is a key regulatory step in the
TCA cycle
...
It is inhibited by
NADH and by ATP and activated by
ADP
...
α-ketoglutarate dehydrogenase
• Generates a high energy
electron carrier (NADH)
...
• Produces a high energy product
(Succinyl-CoA)
...
• The cycle is now ‘carbon neutral’
as the two C taken in as acetate
have been balanced by release
of two CO2 molecules
...
And OAA must be regenerated
...
The reaction sequence converts a methylene group (-CH2-) to a
carbonyl (C=O) via an oxidation, a hydration and a final oxidation;
this “theme” is also found in fat metabolism
...
• Uses FAD as the hydrogen acceptor
(insufficient energy to use NAD+)
...
• Is directly associated with components of
the electron transport chain (coenzyme
Q)
...
Malate Dehydrogenase
• Oxidises malate to OAA
...
• Reaction has a ΔGo’ = +29
...
• Driven by use of reaction products
...
Fumarase
• Hydrates fumarate to L-malate
...
The regeneration of OAA allows the citric acid
cycle to commence again, and also links to
multiple pathways
...
Regulation of the Citric Acid Cycle
Entry into, and metabolism within, the CA cycle is tightly controlled
...
Pyruvate Dehydrogenase
• “Gatekeeper”
• Activated by ADP and pyruvate
...
Isocitrate Dehydrogenase
• Activated by ADP
...
α-ketoglutarate dehydrogenase
• Inhibited by ATP and NADH
...
Citric Acid Cycle in Total
The net reaction of the Citric Acid Cycle is:
•
•
•
Two carbons enter as acetyl CoA and leave as CO2; two
waters are used
...
Three reduced NADH and one FADH2 are generated for use in
oxidative phosphorylation
...
The Cori Cycle: Re-utilisation of Lactate in Liver
•
•
The transport and interconversion of lactate and glucose is
known as the Cori Cycle
...
The LDH reaction is reversible; lactate can be converted to
pyruvate and this happens in the liver
...
Moreover, this pyruvate is a substrate for hepatic
gluconeogenesis and the glucose formed is released into the
blood for use by the brain or exercising muscle
...
Irreversible (exergonic) steps in
glycolysis are bypassed, and specific
gluconeogenic enzymes catalyse
these reverse reactions
...
Unique steps:
All three unique steps in gluconeogenesis by-pass irreversible steps
in glycolysis
...
• Pyruvate carboxylase: converts
pyruvate to OAA; uses ATP
(irreversible); activated by CoA
...
• This is costly
...
By-passing phosphofructokinase
• Once formed, PEP is
converted to F1,6 BP by the
simple reverse reactions
...
• Fructose 1,6 bisphosphate: removes the phosphate from the
C1 position (hence the ‘phosphatase name); large negative
∆G (therefore irreversible); inhibited by fructose 2,6
bisphosphate (which activates PFK); activated by citrate
(which inactivates PFK); is reciprocally regulated’ with PFK
(only one is ‘on’ at a time)
...
• Must by-pass the initial step of glycolysis catalysed by
hexokinase
...
Substrates for Gluconeogenesis
Any metabolite that can be converted to pyruvate or OAA can be a
precursor of G6P and hence glucose in gluconeogenic tissues
...
• Converted to pyruvate by LDH
...
Glycerol
• Generated from breakdown of triacylglycerols (lipids)
...
Amino Acids
• Carbon skeletons are catabolised to pyruvate or TCA cycle
intermediates (e
...
α-ketoglutarate)
...
Title: Carbohydrate Metabolism Study Guide
Description: Covers the pathways of glycolysis, gluconeogenesis, the Krebs/Citric Acid cycle and the structures of key intermediates in central metabolic pathways. Aimed at 1st/2nd year University Students. Taken from Glasgow University Lectures, Molecules of Life course.
Description: Covers the pathways of glycolysis, gluconeogenesis, the Krebs/Citric Acid cycle and the structures of key intermediates in central metabolic pathways. Aimed at 1st/2nd year University Students. Taken from Glasgow University Lectures, Molecules of Life course.