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Title: Study Guide
Description: Notes are very effective & help to study Provide all resources related to either PHYSICS, CHEMISTRY, and BIOLOGY.
Description: Notes are very effective & help to study Provide all resources related to either PHYSICS, CHEMISTRY, and BIOLOGY.
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MOLECULAR BASIS OF INHERITANCE
DNA : Structure of Polynucleotide Chain
● DNA − Polymer of deoxyribonucleotides
● Nucleoside = Nitrogenous base + Pentose sugar (linked through N −
glycosidic bond)
Example − adenosine, deoxyadenosine, cytidine, etc
...
● In course of formation of polynucleotide chain, a phosphate moiety
remains free at 5′ end of ribose sugar (5′ end of polymer chain) and
one -OH group remains free at 3′ end of ribose (3′ end of polymer
chain)
...
Sugar-phosphate forms backbone of this helix while bases project in
wards to each other
...
Purines always pair with their corresponding pyrimidines
...
○ The helix is right-handed
...
4 nm
10 bp in each turn
○ The plane of one base pair stacks over the other in a double
helix
...
Packaging of DNA Helix
Packaging of DNA Helix
● Distance between two consecutive base pairs in a DNA = 0
...
34 × 10−9 m
● Total number of base pairs in a human DNA = 6
...
34 × 10−9 × 6
...
2 m
● 2
...
● Organisation of DNA in prokaryotes:
○ They do not have nucleus
...
○ In certain regions called nucleoids, DNA (negatively charged) is
organised in large loops and is held by some proteins (positively
charged)
...
○ Histone octamer − Unit of eight molecules of histone
○ DNA (negatively charged) winds around histone octamer
(positively charged) to form nucleosome
...
200 bp of DNA
...
○ Beads on string structure in chromatin are further packaged to
form chromatin fibres, which further coil and condense to form
chromosomes during metaphase
...
Transforming Principle
● Griffith performed experiments with the bacteria Streptococcus
pneumoniae
...
S strain Bacteria
R strain Bacteria
○ Produce smooth colonies on
○ Produce rough colonies on
○ Have a polysaccharide coat
○ Do not have a
○ Virulent (causes pneumonia)
○ Non-virulent (does not cause
culture plate
● Griffith’s experiment
culture plate
polysaccharide coat
pneumonia)
● Live R strain in the presence of heat-killed S strain produce virulence
because somehow R strain bacteria is transformed by heat-killed S
strain bacteria
...
Biochemical Nature of Transforming Material
● Avery, McLeod, and McCarthy worked to determine the biochemical
nature of genetic material responsible for transformation
...
Hershey and Chase Experiment to Confirm DNA as the Genetic
Material
● Hershey and Chase worked on bacteriophages (viruses that infect
bacteria)
...
● Hershey and Chase worked to discover whether it was a protein or
DNA that entered the bacteria from virus
...
● These radioactive phages were used to infect E
...
● E
...
● It was observed that bacteria with radioactive DNA were radioactive
while those with radioactive proteins lost their radioactivity
...
Hence, it was concluded that DNA is the genetic
material
...
● It should be chemically and structurally stable
...
● It should follow the Mendelian principles of inheritance
...
the genetic material
...
thymine
...
It acts as a genetic
material in some viruses
...
○ Chemically less
reactive, mutates
○ Mutation in RNA is faster
...
○ RNA directly codes for proteins
...
This makes RNA
unstable and degradable
...
● RNA being a biocatalyst is more reactive
...
DNA Replication with Experimental Proof Machinery and Enzymes
Involved
What is DNA Replication?
● DNA replication is the phenomenon in which a duplicate copy of DNA is
synthesised
...
● After completion of replication, the two copies so produced will have
one parental and one newly synthesised strand
...
Experiment to Prove That DNA Replicates Semi-Conservatively
● Performed by − Messelson and Stahl
● E
...
N was incorporated into newly synthesised DNA as well and the DNA
15
became heavy DNA
...
● Then, cells were again transferred into a medium with 14N as nitrogen
source
...
● E
...
Therefore, the DNA extracted after 20
minutes had a hybrid density
...
● This implies that the newly synthesised DNA obtained one of its
strands from the parent
...
Mechanism of DNA Replication
● Replication occurs in S phase of cell cycle
...
Source of energy − Deoxyribonucleoside triphosphates (DNTPs)
● DNTPs have dual purpose − Act as substrates and provide energy also
● Replication initiates at specific regions in DNA called origin of
replication
...
● During the course of replication, two parent strands do not completely
open, but a small opening forms in which replication occurs
...
● DNA polymerase can polymerise only in one direction that is
● Therefore, replication occurs smoothly at
to
'
...
(continuous replication, but occurs discontinuously at
to
end)
● The discontinuous fragments so formed are joined by DNA ligase
...
● During transcription, only a segment of DNA from only one of the
strands participates
...
Therefore, one DNA would end up giving rise to two
different proteins
...
Transcriptional Unit
● A transcriptional unit has primarily three regions:
○ Promoter − Marks the beginning of transcription; RNA
polymerase binds here
○ Structural gene − Part of the DNA that is actually transcribed
○ Terminator − Marks the end of transcription
Template Strand and Coding Strand
● Enzyme involved in transcription, RNA polymerase (DNA dependent
RNA polymerase), catalyses in only one direction i
...
, 5′ to 3′
...
● The strand with polarity 5′ → 3′ acts as coding strand (which is a
misnomer since it does not code for anything)
...
Gene
● The DNA sequence which codes for tRNA or rRNA molecule defines a
gene
...
DNA is transcribed to form an mRNA, which in turn is
translated to form protein
...
● rRNA (ribosomal RNA) − These are the work benches of translation
...
Transcription Process
● Transcription has three steps − initiation, elongation, and termination
...
○ Association with initiation factor (σ) alters the specificity of RNA
polymerase to initiate the transcription
...
● Termination:
○ Termination occurs when termination factor (P) alters the
specificity of RNA polymerase to terminate the transcription
...
As the enzyme
reaches the termination region, this nascent RNA falls off and
transcription is
○ terminated
...
Therefore, translation can begin even before transcription is
completed
...
● In eukaryotes:
○ Three different kinds of RNA polymerases are present
...
RNA polymerase II transcribes hnRNA (mRNA precursor)
...
○ The precursor of mRNA, i
...
hnRNA, contains both introns and
exons
...
○ Capping − In this, methyl guanosine triphosphate is added to
the 5′ end of hnRNA
...
○ When hnRNA is fully processed, it is known as mRNA, which is
transported out of the nucleus to get translated
...
● George Gamow proposed that if 20 amino acids are to be coded by 4
bases, then the code should be made up of three nucleotides
...
● Har Gobind Khorana developed a chemical method to synthesise RNA
molecules with defined combination of bases
...
● The enzyme known as Severo Ochoa enzyme (polynucleotide
phosphorylase) helped to polymerise RNA with defined sequences in a
template independent manner
...
● Salient features of genetic code:
○ Codon is triplet
...
Codons are
unambiguous
...
○ Genetic code is universal
...
○ Codons are read continuous
...
○ AUG has dual functions − Codes for Methionine and acts as a
start codon
Effects of Mutations on Genetic Code
● Mutations include insertions, deletions, and rearrangements
...
(Change Glu → Val in gene coding for beta globin chain of
haemoglobin) Such mutations are called joint mutations
...
Such mutations are called frameshift mutations
...
Structure of tRNA; Process of Translation; Regulation of Gene
Expression
tRNA
● tRNA is an adapter molecule
...
● tRNA has an anticodon loop that has bases complementary to the
mRNA code and an amino acid acceptor end where it binds to the
corresponding amino acid
...
● There are no tRNAs for stop codons
...
Amino acids are
polymerised to form a polypeptide
...
● First of all, charging of tRNA (amino-acylation of tRNA) takes place
...
● Ribosomes are the workbenches for translation
...
● Smaller subunit comes in contact with mRNA to initiate the process of
translation
...
● Untranslated regions (UTR) are the regions on mRNA that are not
themselves translated, but are required for efficient translation
process
...
● Initiator tRNA recognises the start codon
...
● tRNA moves from codon to codon on the mRNA and amino acids are
added one by one
...
(Termination)
Regulation of Gene Expression
● Regulation of gene expression could be exerted at following levels
...
● Expression of genes coding for enzymes is required only when
substrate for that enzyme is available
...
coli synthesises beta-galactosidase, only when lactose is available
...
○ The activity of RNA polymerase at a given promoter is regulated
by accessory proteins
...
○ A regulatory protein could be activator or repressor
...
Operator
is the region located adjacent to promoter
...
○ Usually operator binds to a repressor protein
...
● The elucidation of lac operon as a transcriptionally active system was
first done by geneticist Jacob and biochemist Monod
...
z
Structural
It codes for β-galactosidase
...
a
Structural
gene
It codes for transacetylase
...
● Inducer − Lactose acts as an inducer for lac operon since it regulates
the switching on and off of the operon
...
● For permease to be present and lactose to enter inside the cells, low
level of expression of lac operon must be present all the time
...
● This repressor binds with the operator region of operon and prevents
RNA polymerase to transcribe genes − z, y, and a (negative
regulation)
...
Regulation in Presence of Inducer
● Inducer binds with the protein product of gene i (repressor) and
inactivates it
...
● In presence of all these enzymes, the metabolism of lactose proceeds
in a normal manner
...
● DNA is the storehouse of genetic information and determining its
sequence of base pairs can solve many medical, agricultural,
environmental, and evolutionary mysteries
...
● Cost of sequencing 1 bp = US $ 3
Cost of sequencing 3 × 109 bp = US $ 9 billion
● Enormous sequence data so generated would have required 3300
books containing 1000 pages each just for a human genome
...
● Genomes of many non-human models such as bacteria, yeast,
Caenorhabditis elegans, Drosophila, plants (rice and Arabidopsis) have
also been sequenced
...
e
...
It basically focuses on sequencing the part denoting a
gene
...
Genome Sequencing
● DNA from the cells is isolated and is randomly broken into fragments
of smaller sizes
...
● Cloned fragments amplify in the host
...
● Common vectors used − BAC (Bacterial artificial chromosomes) and
YAC (Yeast artificial chromosomes)
● Common hosts − Bacteria and yeasts
● Automated sequencers are used to sequence these smaller fragments
(Sanger sequencing)
...
● Alignment of the sequences is also done automatically by computer
programs
...
Preparation of Genetic and physical maps on Genome
● 2 methods are used − restriction polymorphism and microsatellites
● Restriction polymorphism − Specialized enzymes called restriction
endonucleases are used to cut the genome at specialized sites called
restriction endonuclease recognition site and maps are prepared based
on it
...
Observations from HGP
● Human genome contains 3 × 109 (3164
...
● An average gene consists of 3000 bases
...
Largest gene is dystrophin (2
...
● Total number of genes in human genome − 30,000
● Over 50% of the discovered genes have unknown functions
...
● Large portion of genome consists of repeating sequences
...
They are repeated over
hundred to thousand times
...
● Chromosome with most genes − Chromosome 1 (2968)
Chromosome with fewest genes − Chromosomes Y (231)
● SNPs (single nucleotide polymorphism) occur at about 1
...
They are believed to have significance in
explaining diseases and evolutionary history of human beings
...
● 99
...
It is
the remaining 0
...
● It is a really difficult and time-consuming task to sequence and
compare all 3 × 109 bases in two individuals
...
Basis of DNA Fingerprinting
● Repetitive DNA is separated from bulk genomic DNA since it appears
as a distinct peak during density gradient centrifugation
...
● Satellites do not code for proteins, but have a major role to play in
DNA fingerprinting
...
A germ cell mutation
(which can pass on to the next generation through sexual
reproduction) gives rise to polymorphism in populations
...
● Polymorphisms arise normally in non-coding sequences because
mutations in non-coding sequences do not affect an individual’s
reproductive ability
...
● VNTRs are used as probes in DNA fingerprinting
...
● Fragments are separated according to their size and molecular weight
on gel electrophoresis
...
● Immobilised fragments are hybridised with a VNTR probe
...
● VNTRs vary in size from 0
...
● Hence, in the autoradiogram, band of different sizes will be obtained
...
They are different in
each individual, except identical twins
...
● DNA fingerprinting forms the basis of paternity testing since a child
inherits polymorphism from both its parents
...
Title: Study Guide
Description: Notes are very effective & help to study Provide all resources related to either PHYSICS, CHEMISTRY, and BIOLOGY.
Description: Notes are very effective & help to study Provide all resources related to either PHYSICS, CHEMISTRY, and BIOLOGY.